ReconX Knowledge Graph

GraphDB	GraphDB user interface and SPARQL endpoint SPARQL endpoint URL: `https://reconx.vital-it.ch/graphdb/repositories/ReconXKG` SPARQL queries time out after 3 min
Fuseki	SOON! Fuseki SPARQL endpoint SPARQL endpoint URL: `https://reconx.vital-it.ch/fuseki/ReconXKG/sparql` SPARQL queries time out after 3 min

Links and documentations

The source code of this website is on gitlab.com (in the www directory)

	Vocabulary	SPARQL interface	Endpoint	Remark
ReconX	widoco	GraphDB query form	`https://reconx.vital-it.ch/graphdb/repositories/ReconXKG`	SPARQL queries time out after 3 min
RHEA		query form and documentation	`https://sparql.rhea-db.org/sparql`
MetaNetX beta	widoco	query form and documentation	`https://beta.metanetx.org/sparql`	This endpoint will become available soon
UniProt	widoco	query form and documentation	`https://sparql.uniprot.org/sparql`

Enzy-equa connected components

Connected components with more than 100 members are not shown.
Transport reactions are not (yet) included in decompartmentalized (_dc) versions. Model external reactions are not included.

	mnets	reac2equa	enzy2cplx
show	reconx:vmh_Recon	reconx:equaSource	reconx:cplxSource
show	reconx:vmh_Recon	reconx:equaVMH	reconx:cplxVMH	Same as source, but metabolite redundancy removed... to some extent
show	reconx:vmh_Recon	reconx:equaMNX	reconx:cplxUP	Same as source, but metabolite redundancy removed... to some extent
show	reconx:RHEA	reconx:equaSource	reconx:cplxSource
show	reconx:RHEA	reconx:equaVMH	reconx:cplxVMH	Experimental
show	reconx:RHEA	reconx:equaMNX	reconx:cplxUP	Same as source, but some metabolites might have been merged.
show	reconx:RHEA + reconx:vmh_Recon	reconx:equaVMH_dc	reconx:cplxVMH	Experimental
show	reconx:RHEA + reconx:vmh_Recon	reconx:equaMNX_dc	reconx:cplxUP